################ Results ################ >Queries_used_in_the_analysis Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio <= [Identities = 434/436 (99%)] : Homo-sapiens-E102_XXX1 Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo <= [Identities = 440/440 (100%)] : Branchiostoma-floridae-rs_XXX Homo-sapiens-E102_ENST00000389554.8_TBR1-T-box-brain-transc <= [Identities = 682/682 (100%)] : Homo-sapiens-E102_ENST00000389554.7_T-box-brain-1 >BootstrapValue_OrthogroupMonophyly The orthogroup monophyly is supported by 100% bootstrap value. >Orthogroup Acanthaster-planci_oki15-190_NONE Botryllus-schlosseri_botctg002459g63408_NONE Branchiostoma-belcheri-1_XP019623300.1_109469259-brachyury-protein-homolog-1-isoform Branchiostoma-belcheri-1_XP019623304.1_109469262-brachyury-protein-homolog-2-isoform Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo Branchiostoma-floridae-rs_XP035687472.1_118423429-T-box-transcription-factor-T-homolo Ciona-intestinalis_ENSCINT00000001477.3_brachyury-transcript Ciona-savignyi_ENSCSAVT00000003855.1_NONE Crassostrea-gigas_EKC28765_Brachyury-protein Drosophila-melanogaster_FBtr0332070_byn-brachyenteron-DBNLI Gallus-gallus-E102_ENSGALT00000018726.5_TBXT-T-brachyury-tra Gallus-gallus-E102_ENSGALT00000024597.4_TBX19-T-box-19 Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio Homo-sapiens-E102_ENST00000367821.8_TBX19-T-box-transcripti Oikopleura-dioica_GSOIDT00000279001_NONE Ptychodera-flava_PF18670-t1_NONE Saccoglossus-kowalevskii_Sakowv30011577_NONE Strongylocentrotus-purpuratus_SPU013015-tr_SP-BRA-Uncharacte >Number_of_orthogroup_member Crassostrea-gigas :1 Pinctada-fucata :0 Caenorhabditis-elegans :0 Drosophila-melanogaster :1 Saccoglossus-kowalevskii :1 Ptychodera-flava :1 Acanthaster-planci :1 Strongylocentrotus-purpuratus :1 Branchiostoma-belcheri-1 :2 Branchiostoma-floridae-rs :2 Oikopleura-dioica :1 Ciona-savignyi :1 Ciona-intestinalis :1 Botryllus-schlosseri :1 Gallus-gallus-E102 :2 Homo-sapiens-E102 :2 >Rearranged_gene_tree_newick (((((((((((((((Pinctada-fucata_pfu930-101250t1_NONE,Crassostrea-gigas_EKC26469_T-box-transcription-factor-TBX2)100_S=Bivalvia_D=N,Drosophila-melanogaster_FBtr0331162_bi-bifid-DBNLINE-60)69_S=Protostomia_D=N,(Strongylocentrotus-purpuratus_SPU023386-tr_SP-TBX2-3-Unchara,Ptychodera-flava_PF10086-t1_NONE)97_S=Ambulacraria_D=N)73_S=Nephrozoa_D=N,(Oikopleura-dioica_GSOIDT00007455001_NONE,((Ciona-intestinalis_ENSCINT00000017704.3_NONE,Ciona-savignyi_ENSCSAVT00000016577.1_NONE)82_S=Ciona_D=N,Botryllus-schlosseri_botctg007226g53212_NONE)100_S=Ascidiacea_D=N)r_S=Urochordata_D=N)80_S=Nephrozoa_D=Y,Caenorhabditis-elegans_F21H11.3.1_tbx-2-T-box-protein-2)87_S=Nephrozoa_D=Y,Oikopleura-dioica_GSOIDT00004289001_NONE)80_S=Nephrozoa_D=Y,((((Ptychodera-flava_PF18712-t1_NONE,Saccoglossus-kowalevskii_Sakowv30012255_NONE)100_S=Hemichordata_D=N,(Branchiostoma-floridae-rs_XP035691536.1_118426331-T-box-containing-protein-TBX6L-like,Branchiostoma-belcheri-1_XP019614038.1_109461997-T-box-containing-protein-TBX6L-like)100_S=AsymmetronBranchiostoma_D=N)86_S=Deuterostomia_D=N,Crassostrea-gigas_EKC20476_T-box-transcription-factor-TBX2)91_S=Nephrozoa_D=N,(Homo-sapiens-E102_ENST00000405440.7_TBX5-T-box-transcriptio,Gallus-gallus-E102_ENSGALT00000013434.6_TBX5-T-box-5)100_S=Amniota_D=N)81_S=Nephrozoa_D=Y)r_S=Nephrozoa_D=Y,((Acanthaster-planci_oki169-35_NONE,Pinctada-fucata_pfu26-120078t1_NONE)100_S=Nephrozoa_D=N,Caenorhabditis-elegans_T27A1.6_mab-9-T-box-protein-12)94_S=Nephrozoa_D=Y)r_S=Nephrozoa_D=Y,((Caenorhabditis-elegans_H14A12.4_mls-1-T-box-transcription-fa,(Drosophila-melanogaster_FBtr0076522_Doc1-Dorsocross1-DBNLIN,Drosophila-melanogaster_FBtr0076547_Doc2-Dorsocross2-DBNLIN)100_S=Drosophila-melanogaster_D=Y)r_S=NematodaArthropoda_D=N,(Acanthaster-planci_oki84-25_NONE,((Oikopleura-dioica_GSOIDT00014261001_NONE,Oikopleura-dioica_GSOIDT00006159001_NONE)r_S=Oikopleura-dioica_D=Y,(((Ciona-intestinalis_ENSCINT00000037322.1_tbx6a-T-box-transcri,Ciona-savignyi_ENSCSAVT00000020041.1_NONE)100_S=Ciona_D=N,Ciona-intestinalis_ENSCINT00000034896.1_NONE)97_S=Ciona_D=Y,Botryllus-schlosseri_botctg005874g48703_NONE)96_S=Ascidiacea_D=N)r_S=Urochordata_D=N)r_S=Deuterostomia_D=N)r_S=Nephrozoa_D=N)61_S=Nephrozoa_D=Y,((Crassostrea-gigas_EKC28765_Brachyury-protein,Drosophila-melanogaster_FBtr0332070_byn-brachyenteron-DBNLI)r_S=Protostomia_D=N,(((Ptychodera-flava_PF18670-t1_NONE,Saccoglossus-kowalevskii_Sakowv30011577_NONE)100_S=Hemichordata_D=N,(Strongylocentrotus-purpuratus_SPU013015-tr_SP-BRA-Uncharacte,Acanthaster-planci_oki15-190_NONE)85_S=Eleutherozoa_D=N)r_S=Ambulacraria_D=N,(((Branchiostoma-floridae-rs_XP035687472.1_118423429-T-box-transcription-factor-T-homolo,Branchiostoma-belcheri-1_XP019623300.1_109469259-brachyury-protein-homolog-1-isoform)100_S=AsymmetronBranchiostoma_D=N,(Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo,Branchiostoma-belcheri-1_XP019623304.1_109469262-brachyury-protein-homolog-2-isoform)100_S=AsymmetronBranchiostoma_D=N)99_S=AsymmetronBranchiostoma_D=Y,((Oikopleura-dioica_GSOIDT00000279001_NONE,((Ciona-intestinalis_ENSCINT00000001477.3_brachyury-transcript,Ciona-savignyi_ENSCSAVT00000003855.1_NONE)100_S=Ciona_D=N,Botryllus-schlosseri_botctg002459g63408_NONE)r_S=Ascidiacea_D=N)r_S=Urochordata_D=N,((Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio,Gallus-gallus-E102_ENSGALT00000018726.5_TBXT-T-brachyury-tra)97_S=Amniota_D=N,(Homo-sapiens-E102_ENST00000367821.8_TBX19-T-box-transcripti,Gallus-gallus-E102_ENSGALT00000024597.4_TBX19-T-box-19)100_S=Amniota_D=N)66_S=Amniota_D=Y)r_S=Olfactore_D=N)r_S=Chordata_D=N)r_S=Deuterostomia_D=N)100_S=Nephrozoa_D=N)r_S=Nephrozoa_D=Y,Acanthaster-planci_oki58-6_NONE)100_S=Nephrozoa_D=Y,(((Homo-sapiens-E102_ENST00000389554.8_TBR1-T-box-brain-transc,Gallus-gallus-E102_ENSGALT00000067150.2_TBR1-T-box-brain-1)100_S=Amniota_D=N,(Homo-sapiens-E102_ENST00000449599.4_EOMES-eomesodermin,Gallus-gallus-E102_ENSGALT00000042658.4_EOMES-eomesodermin)100_S=Amniota_D=N)98_S=Amniota_D=Y,Homo-sapiens-E102_ENST00000177694.2_TBX21-T-box-transcripti)86_S=Amniota_D=Y)74_S=Nephrozoa_D=Y,(((Ptychodera-flava_PF12118-t1_NONE,Saccoglossus-kowalevskii_Sakowv30002752_NONE)100_S=Hemichordata_D=N,(Acanthaster-planci_oki20-22_NONE,Strongylocentrotus-purpuratus_SPU025584-tr_SP-TBR-Uncharacte)r_S=Eleutherozoa_D=N)73_S=Ambulacraria_D=N,(Branchiostoma-floridae-rs_XP035658836.1_118404018-T-box-transcription-factor-T-homolo,Branchiostoma-belcheri-1_XP019632778.1_109476306-brachyury-protein-like)100_S=AsymmetronBranchiostoma_D=N)r_S=Deuterostomia_D=N)100_S=Nephrozoa_D=Y,Pinctada-fucata_pfu5110-102705t1_NONE)100_S=Nephrozoa_D=Y,Crassostrea-gigas_EKC28235_T-box-brain-protein-1)100_S=Nephrozoa_D=Y; >Rearranged_gene_tree_nhx (((((((((((((((Pinctada-fucata_pfu930-101250t1_NONE:0.01064094155[&&NHX:S=Pinctada-fucata],Crassostrea-gigas_EKC26469_T-box-transcription-factor-TBX2:0.009950475142[&&NHX:S=Crassostrea-gigas])n2:0.03794493963[&&NHX:S=Bivalvia:D=N:B=100.0],Drosophila-melanogaster_FBtr0331162_bi-bifid-DBNLINE-60:0.04511793788[&&NHX:S=Drosophila-melanogaster])n4:0.01810499597[&&NHX:S=Protostomia:D=N:B=69.0],(Strongylocentrotus-purpuratus_SPU023386-tr_SP-TBX2-3-Unchara:0.03738351218[&&NHX:S=Strongylocentrotus-purpuratus],Ptychodera-flava_PF10086-t1_NONE:0.03500453934[&&NHX:S=Ptychodera-flava])n7:0.02546964426[&&NHX:S=Ambulacraria:D=N:B=97.0])n8:0.01239178861[&&NHX:S=Nephrozoa:D=N:B=73.0],(Oikopleura-dioica_GSOIDT00007455001_NONE:0.0768556371[&&NHX:S=Oikopleura-dioica],((Ciona-intestinalis_ENSCINT00000017704.3_NONE:0.02013602616[&&NHX:S=Ciona-intestinalis],Ciona-savignyi_ENSCSAVT00000016577.1_NONE:0.01508200108[&&NHX:S=Ciona-savignyi])n11:0.01442140966[&&NHX:S=Ciona:D=N:B=82.0],Botryllus-schlosseri_botctg007226g53212_NONE:0.01207338496[&&NHX:S=Botryllus-schlosseri])n13:0.05002085534[&&NHX:S=Ascidiacea:D=N:B=100.0])r254[&&NHX:S=Urochordata:D=N])n16:0.01936319438[&&NHX:S=Nephrozoa:D=Y:B=80.0],Caenorhabditis-elegans_F21H11.3.1_tbx-2-T-box-protein-2:0.1290146406[&&NHX:S=Caenorhabditis-elegans])n18:0.02362815565[&&NHX:S=Nephrozoa:D=Y:B=87.0],Oikopleura-dioica_GSOIDT00004289001_NONE:0.1304087208[&&NHX:S=Oikopleura-dioica])n20:0.02578083176[&&NHX:S=Nephrozoa:D=Y:B=80.0],((((Ptychodera-flava_PF18712-t1_NONE:0.01009555628[&&NHX:S=Ptychodera-flava],Saccoglossus-kowalevskii_Sakowv30012255_NONE:0.02209585839[&&NHX:S=Saccoglossus-kowalevskii])n23:0.03749028417[&&NHX:S=Hemichordata:D=N:B=100.0],(Branchiostoma-floridae-rs_XP035691536.1_118426331-T-box-containing-protein-TBX6L-like:0.005146935374[&&NHX:S=Branchiostoma-floridae-rs],Branchiostoma-belcheri-1_XP019614038.1_109461997-T-box-containing-protein-TBX6L-like:0.003448946798[&&NHX:S=Branchiostoma-belcheri-1])n26:0.05943882075[&&NHX:S=AsymmetronBranchiostoma:D=N:B=100.0])n27:0.01554744555[&&NHX:S=Deuterostomia:D=N:B=86.0],Crassostrea-gigas_EKC20476_T-box-transcription-factor-TBX2:0.07095522776[&&NHX:S=Crassostrea-gigas])n29:0.02262316264[&&NHX:S=Nephrozoa:D=N:B=91.0],(Homo-sapiens-E102_ENST00000405440.7_TBX5-T-box-transcriptio:0.00963279792[&&NHX:S=Homo-sapiens-E102],Gallus-gallus-E102_ENSGALT00000013434.6_TBX5-T-box-5:0.01095861878[&&NHX:S=Gallus-gallus-E102])n32:0.1207194364[&&NHX:S=Amniota:D=N:B=100.0])n33:0.02215647139[&&NHX:S=Nephrozoa:D=Y:B=81.0])r156[&&NHX:S=Nephrozoa:D=Y],((Acanthaster-planci_oki169-35_NONE:0.1124433704[&&NHX:S=Acanthaster-planci],Pinctada-fucata_pfu26-120078t1_NONE:0.05031752868[&&NHX:S=Pinctada-fucata])n37:0.05407645734[&&NHX:S=Nephrozoa:D=N:B=100.0],Caenorhabditis-elegans_T27A1.6_mab-9-T-box-protein-12:0.1846781626[&&NHX:S=Caenorhabditis-elegans])n39:0.05382400446[&&NHX:S=Nephrozoa:D=Y:B=94.0])r155[&&NHX:S=Nephrozoa:D=Y],((Caenorhabditis-elegans_H14A12.4_mls-1-T-box-transcription-fa:0.2215381025[&&NHX:S=Caenorhabditis-elegans],(Drosophila-melanogaster_FBtr0076522_Doc1-Dorsocross1-DBNLIN:0.04593255393[&&NHX:S=Drosophila-melanogaster],Drosophila-melanogaster_FBtr0076547_Doc2-Dorsocross2-DBNLIN:0.05251021372[&&NHX:S=Drosophila-melanogaster])n42:0.1868442888[&&NHX:S=Drosophila-melanogaster:D=Y:B=100.0])r162[&&NHX:S=NematodaArthropoda:D=N],(Acanthaster-planci_oki84-25_NONE:0.2266990805[&&NHX:S=Acanthaster-planci],((Oikopleura-dioica_GSOIDT00014261001_NONE:0.2125379323[&&NHX:S=Oikopleura-dioica],Oikopleura-dioica_GSOIDT00006159001_NONE:0.2171107254[&&NHX:S=Oikopleura-dioica])r241[&&NHX:S=Oikopleura-dioica:D=Y],(((Ciona-intestinalis_ENSCINT00000037322.1_tbx6a-T-box-transcri:0.03560905607[&&NHX:S=Ciona-intestinalis],Ciona-savignyi_ENSCSAVT00000020041.1_NONE:0.02112155739[&&NHX:S=Ciona-savignyi])n53:0.07064110577[&&NHX:S=Ciona:D=N:B=100.0],Ciona-intestinalis_ENSCINT00000034896.1_NONE:0.110817106[&&NHX:S=Ciona-intestinalis])n55:0.06290760607[&&NHX:S=Ciona:D=Y:B=97.0],Botryllus-schlosseri_botctg005874g48703_NONE:0.2808258773[&&NHX:S=Botryllus-schlosseri])n57:0.05933045506[&&NHX:S=Ascidiacea:D=N:B=96.0])r237[&&NHX:S=Urochordata:D=N])r219[&&NHX:S=Deuterostomia:D=N])r157[&&NHX:S=Nephrozoa:D=N])n60:0.03179026809[&&NHX:S=Nephrozoa:D=Y:B=61.0],((Crassostrea-gigas_EKC28765_Brachyury-protein:0.09095119391[&&NHX:S=Crassostrea-gigas],Drosophila-melanogaster_FBtr0332070_byn-brachyenteron-DBNLI:0.1124048111[&&NHX:S=Drosophila-melanogaster])r263[&&NHX:S=Protostomia:D=N],(((Ptychodera-flava_PF18670-t1_NONE:0.01461600589[&&NHX:S=Ptychodera-flava],Saccoglossus-kowalevskii_Sakowv30011577_NONE:0.02976492329[&&NHX:S=Saccoglossus-kowalevskii])n78:0.05698679069[&&NHX:S=Hemichordata:D=N:B=100.0],(Strongylocentrotus-purpuratus_SPU013015-tr_SP-BRA-Uncharacte:0.07336079599[&&NHX:S=Strongylocentrotus-purpuratus],Acanthaster-planci_oki15-190_NONE:0.06647377492[&&NHX:S=Acanthaster-planci])n82:0.02402705987[&&NHX:S=Eleutherozoa:D=N:B=85.0])r327[&&NHX:S=Ambulacraria:D=N],(((Branchiostoma-floridae-rs_XP035687472.1_118423429-T-box-transcription-factor-T-homolo:0.006550303273[&&NHX:S=Branchiostoma-floridae-rs],Branchiostoma-belcheri-1_XP019623300.1_109469259-brachyury-protein-homolog-1-isoform:0.007920767933[&&NHX:S=Branchiostoma-belcheri-1])n70:0.01674308059[&&NHX:S=AsymmetronBranchiostoma:D=N:B=100.0],(Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo:0.002697303127[&&NHX:S=Branchiostoma-floridae-rs],Branchiostoma-belcheri-1_XP019623304.1_109469262-brachyury-protein-homolog-2-isoform:0.00307155759[&&NHX:S=Branchiostoma-belcheri-1])n73:0.02205148938[&&NHX:S=AsymmetronBranchiostoma:D=N:B=100.0])n74:0.04123516448[&&NHX:S=AsymmetronBranchiostoma:D=Y:B=99.0],((Oikopleura-dioica_GSOIDT00000279001_NONE:0.1231876165[&&NHX:S=Oikopleura-dioica],((Ciona-intestinalis_ENSCINT00000001477.3_brachyury-transcript:0.04575402022[&&NHX:S=Ciona-intestinalis],Ciona-savignyi_ENSCSAVT00000003855.1_NONE:0.02335243614[&&NHX:S=Ciona-savignyi])n86:0.08902043268[&&NHX:S=Ciona:D=N:B=100.0],Botryllus-schlosseri_botctg002459g63408_NONE:0.09150772572[&&NHX:S=Botryllus-schlosseri])r341[&&NHX:S=Ascidiacea:D=N])r334[&&NHX:S=Urochordata:D=N],((Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio:0.01297198103[&&NHX:S=Homo-sapiens-E102],Gallus-gallus-E102_ENSGALT00000018726.5_TBXT-T-brachyury-tra:0.01323961809[&&NHX:S=Gallus-gallus-E102])n63:0.02646512992[&&NHX:S=Amniota:D=N:B=97.0],(Homo-sapiens-E102_ENST00000367821.8_TBX19-T-box-transcripti:0.03012938389[&&NHX:S=Homo-sapiens-E102],Gallus-gallus-E102_ENSGALT00000024597.4_TBX19-T-box-19:0.02088304868[&&NHX:S=Gallus-gallus-E102])n66:0.05314078853[&&NHX:S=Amniota:D=N:B=100.0])n67:0.004905225614[&&NHX:S=Amniota:D=Y:B=66.0])r333[&&NHX:S=Olfactore:D=N])r330[&&NHX:S=Chordata:D=N])r326[&&NHX:S=Deuterostomia:D=N])n95:0.09737195806[&&NHX:S=Nephrozoa:D=N:B=100.0])r135[&&NHX:S=Nephrozoa:D=Y],Acanthaster-planci_oki58-6_NONE:0.3074588429[&&NHX:S=Acanthaster-planci])n98:0.1031105476[&&NHX:S=Nephrozoa:D=Y:B=100.0],(((Homo-sapiens-E102_ENST00000389554.8_TBR1-T-box-brain-transc:0.01021648628[&&NHX:S=Homo-sapiens-E102],Gallus-gallus-E102_ENSGALT00000067150.2_TBR1-T-box-brain-1:0.004395663565[&&NHX:S=Gallus-gallus-E102])n101:0.02781241318[&&NHX:S=Amniota:D=N:B=100.0],(Homo-sapiens-E102_ENST00000449599.4_EOMES-eomesodermin:0.02735935616[&&NHX:S=Homo-sapiens-E102],Gallus-gallus-E102_ENSGALT00000042658.4_EOMES-eomesodermin:0.01430992258[&&NHX:S=Gallus-gallus-E102])n104:0.04467923609[&&NHX:S=Amniota:D=N:B=100.0])n105:0.04251515395[&&NHX:S=Amniota:D=Y:B=98.0],Homo-sapiens-E102_ENST00000177694.2_TBX21-T-box-transcripti:0.09440918081[&&NHX:S=Homo-sapiens-E102])n107:0.05100139378[&&NHX:S=Amniota:D=Y:B=86.0])n108:0.02464425883[&&NHX:S=Nephrozoa:D=Y:B=74.0],(((Ptychodera-flava_PF12118-t1_NONE:0.007937425687[&&NHX:S=Ptychodera-flava],Saccoglossus-kowalevskii_Sakowv30002752_NONE:0.02679555057[&&NHX:S=Saccoglossus-kowalevskii])n118:0.04404293428[&&NHX:S=Hemichordata:D=N:B=100.0],(Acanthaster-planci_oki20-22_NONE:0.09121779339[&&NHX:S=Acanthaster-planci],Strongylocentrotus-purpuratus_SPU025584-tr_SP-TBR-Uncharacte:0.1120177778[&&NHX:S=Strongylocentrotus-purpuratus])r368[&&NHX:S=Eleutherozoa:D=N])n119:0.02327655415[&&NHX:S=Ambulacraria:D=N:B=73.0],(Branchiostoma-floridae-rs_XP035658836.1_118404018-T-box-transcription-factor-T-homolo:0.007094070304[&&NHX:S=Branchiostoma-floridae-rs],Branchiostoma-belcheri-1_XP019632778.1_109476306-brachyury-protein-like:0.00154514786[&&NHX:S=Branchiostoma-belcheri-1])n111:0.08010825312[&&NHX:S=AsymmetronBranchiostoma:D=N:B=100.0])r129[&&NHX:S=Deuterostomia:D=N])n120:0.05982601159[&&NHX:S=Nephrozoa:D=Y:B=100.0],Pinctada-fucata_pfu5110-102705t1_NONE:0.03477110823[&&NHX:S=Pinctada-fucata])n122:0.0[&&NHX:S=Nephrozoa:D=Y:B=100.0],Crassostrea-gigas_EKC28235_T-box-brain-protein-1:0.07536936049[&&NHX:S=Crassostrea-gigas])n124[&&NHX:S=Nephrozoa:D=Y:B=100.0]; >Gene_tree_newick ((((((((((((((((Crassostrea-gigas_EKC26469_T-box-transcription-factor-TBX2:0.009950475142,Pinctada-fucata_pfu930-101250t1_NONE:0.01064094155)100:0.03794493963,Drosophila-melanogaster_FBtr0331162_bi-bifid-DBNLINE-60:0.04511793788)69:0.01810499597,(Ptychodera-flava_PF10086-t1_NONE:0.03500453934,Strongylocentrotus-purpuratus_SPU023386-tr_SP-TBX2-3-Unchara:0.03738351218)97:0.02546964426)73:0.01239178861,(((Ciona-savignyi_ENSCSAVT00000016577.1_NONE:0.01508200108,Ciona-intestinalis_ENSCINT00000017704.3_NONE:0.02013602616)82:0.01442140966,Botryllus-schlosseri_botctg007226g53212_NONE:0.01207338496)100:0.05002085534,Oikopleura-dioica_GSOIDT00007455001_NONE:0.0768556371)56:0.01217694567)80:0.01936319438,Caenorhabditis-elegans_F21H11.3.1_tbx-2-T-box-protein-2:0.1290146406)87:0.02362815565,Oikopleura-dioica_GSOIDT00004289001_NONE:0.1304087208)80:0.02578083176,((((Saccoglossus-kowalevskii_Sakowv30012255_NONE:0.02209585839,Ptychodera-flava_PF18712-t1_NONE:0.01009555628)100:0.03749028417,(Branchiostoma-belcheri-1_XP019614038.1_109461997-T-box-containing-protein-TBX6L-like:0.003448946798,Branchiostoma-floridae-rs_XP035691536.1_118426331-T-box-containing-protein-TBX6L-like:0.005146935374)100:0.05943882075)86:0.01554744555,Crassostrea-gigas_EKC20476_T-box-transcription-factor-TBX2:0.07095522776)91:0.02262316264,(Gallus-gallus-E102_ENSGALT00000013434.6_TBX5-T-box-5:0.01095861878,Homo-sapiens-E102_ENST00000405440.7_TBX5-T-box-transcriptio:0.00963279792)100:0.1207194364)81:0.02215647139)47:0.0187475387,(((Pinctada-fucata_pfu26-120078t1_NONE:0.05031752868,Acanthaster-planci_oki169-35_NONE:0.1124433704)100:0.05407645734,Caenorhabditis-elegans_T27A1.6_mab-9-T-box-protein-12:0.1846781626)94:0.05382400446,(Drosophila-melanogaster_FBtr0076547_Doc2-Dorsocross2-DBNLIN:0.05251021372,Drosophila-melanogaster_FBtr0076522_Doc1-Dorsocross1-DBNLIN:0.04593255393)100:0.1868442888)28:0.01442196481)5:0.003398275581,((Caenorhabditis-elegans_H14A12.4_mls-1-T-box-transcription-fa:0.2215381025,Oikopleura-dioica_GSOIDT00014261001_NONE:0.2125379323)47:0.01815218413,Acanthaster-planci_oki84-25_NONE:0.2266990805)21:0.01611650294)11:0.01086396943,((((Ciona-savignyi_ENSCSAVT00000020041.1_NONE:0.02112155739,Ciona-intestinalis_ENSCINT00000037322.1_tbx6a-T-box-transcri:0.03560905607)100:0.07064110577,Ciona-intestinalis_ENSCINT00000034896.1_NONE:0.110817106)97:0.06290760607,Botryllus-schlosseri_botctg005874g48703_NONE:0.2808258773)96:0.05933045506,Oikopleura-dioica_GSOIDT00006159001_NONE:0.2171107254)40:0.02233649615)61:0.03179026809,(((((((((Gallus-gallus-E102_ENSGALT00000018726.5_TBXT-T-brachyury-tra:0.01323961809,Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio:0.01297198103)97:0.02646512992,(Gallus-gallus-E102_ENSGALT00000024597.4_TBX19-T-box-19:0.02088304868,Homo-sapiens-E102_ENST00000367821.8_TBX19-T-box-transcripti:0.03012938389)100:0.05314078853)66:0.004905225614,((Branchiostoma-belcheri-1_XP019623300.1_109469259-brachyury-protein-homolog-1-isoform:0.007920767933,Branchiostoma-floridae-rs_XP035687472.1_118423429-T-box-transcription-factor-T-homolo:0.006550303273)100:0.01674308059,(Branchiostoma-belcheri-1_XP019623304.1_109469262-brachyury-protein-homolog-2-isoform:0.00307155759,Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo:0.002697303127)100:0.02205148938)99:0.04123516448)54:0.008442833842,(Saccoglossus-kowalevskii_Sakowv30011577_NONE:0.02976492329,Ptychodera-flava_PF18670-t1_NONE:0.01461600589)100:0.05698679069)47:0.01576331596,(Acanthaster-planci_oki15-190_NONE:0.06647377492,Strongylocentrotus-purpuratus_SPU013015-tr_SP-BRA-Uncharacte:0.07336079599)85:0.02402705987)10:0.01251824625,(((Ciona-savignyi_ENSCSAVT00000003855.1_NONE:0.02335243614,Ciona-intestinalis_ENSCINT00000001477.3_brachyury-transcript:0.04575402022)100:0.08902043268,Botryllus-schlosseri_botctg002459g63408_NONE:0.09150772572)58:0.0212119343,Oikopleura-dioica_GSOIDT00000279001_NONE:0.1231876165)24:0.003892136407)31:0.0142351978,Drosophila-melanogaster_FBtr0332070_byn-brachyenteron-DBNLI:0.1124048111)29:0.006557674161,Crassostrea-gigas_EKC28765_Brachyury-protein:0.09095119391)100:0.09737195806,Acanthaster-planci_oki58-6_NONE:0.3074588429)59:0.02621849465)100:0.1031105476,(((Gallus-gallus-E102_ENSGALT00000067150.2_TBR1-T-box-brain-1:0.004395663565,Homo-sapiens-E102_ENST00000389554.8_TBR1-T-box-brain-transc:0.01021648628)100:0.02781241318,(Gallus-gallus-E102_ENSGALT00000042658.4_EOMES-eomesodermin:0.01430992258,Homo-sapiens-E102_ENST00000449599.4_EOMES-eomesodermin:0.02735935616)100:0.04467923609)98:0.04251515395,Homo-sapiens-E102_ENST00000177694.2_TBX21-T-box-transcripti:0.09440918081)86:0.05100139378)74:0.02464425883,(Branchiostoma-belcheri-1_XP019632778.1_109476306-brachyury-protein-like:0.00154514786,Branchiostoma-floridae-rs_XP035658836.1_118404018-T-box-transcription-factor-T-homolo:0.007094070304)100:0.08010825312)50:0.01822414012,((Acanthaster-planci_oki20-22_NONE:0.09121779339,Strongylocentrotus-purpuratus_SPU025584-tr_SP-TBR-Uncharacte:0.1120177778)43:0.01695935102,(Saccoglossus-kowalevskii_Sakowv30002752_NONE:0.02679555057,Ptychodera-flava_PF12118-t1_NONE:0.007937425687)100:0.04404293428)73:0.02327655415)100:0.05982601159,Pinctada-fucata_pfu5110-102705t1_NONE:0.03477110823)100:0,Crassostrea-gigas_EKC28235_T-box-brain-protein-1:0.07536936049)100; >Number_of_blastHits Crassostrea-gigas :4 Pinctada-fucata :3 Caenorhabditis-elegans :3 Drosophila-melanogaster :4 Saccoglossus-kowalevskii :3 Ptychodera-flava :4 Acanthaster-planci :5 Strongylocentrotus-purpuratus :3 Branchiostoma-belcheri-1 :4 Branchiostoma-floridae-rs :4 Oikopleura-dioica :5 Ciona-savignyi :3 Ciona-intestinalis :4 Botryllus-schlosseri :3 Gallus-gallus-E102 :5 Homo-sapiens-E102 :6 >Aligned-site_rate Crassostrea-gigas_EKC28235_T-box-brain-protein-1 :0.903 Crassostrea-gigas_EKC26469_T-box-transcription-factor-TBX2 :1.0 Crassostrea-gigas_EKC20476_T-box-transcription-factor-TBX2 :1.0 Crassostrea-gigas_EKC28765_Brachyury-protein :1.0 Pinctada-fucata_pfu26-120078t1_NONE :1.0 Pinctada-fucata_pfu930-101250t1_NONE :1.0 Pinctada-fucata_pfu5110-102705t1_NONE :1.0 Caenorhabditis-elegans_T27A1.6_mab-9-T-box-protein-12 :1.0 Caenorhabditis-elegans_H14A12.4_mls-1-T-box-transcription-fa :0.983 Caenorhabditis-elegans_F21H11.3.1_tbx-2-T-box-protein-2 :1.0 Drosophila-melanogaster_FBtr0076547_Doc2-Dorsocross2-DBNLIN :1.0 Drosophila-melanogaster_FBtr0076522_Doc1-Dorsocross1-DBNLIN :1.0 Drosophila-melanogaster_FBtr0331162_bi-bifid-DBNLINE-60 :1.0 Drosophila-melanogaster_FBtr0332070_byn-brachyenteron-DBNLI :1.0 Saccoglossus-kowalevskii_Sakowv30002752_NONE :1.0 Saccoglossus-kowalevskii_Sakowv30012255_NONE :1.0 Saccoglossus-kowalevskii_Sakowv30011577_NONE :1.0 Ptychodera-flava_PF12118-t1_NONE :0.926 Ptychodera-flava_PF10086-t1_NONE :1.0 Ptychodera-flava_PF18712-t1_NONE :1.0 Ptychodera-flava_PF18670-t1_NONE :1.0 Acanthaster-planci_oki84-25_NONE :0.989 Acanthaster-planci_oki58-6_NONE :0.994 Acanthaster-planci_oki169-35_NONE :1.0 Acanthaster-planci_oki20-22_NONE :1.0 Acanthaster-planci_oki15-190_NONE :1.0 Strongylocentrotus-purpuratus_SPU025584-tr_SP-TBR-Uncharacte :1.0 Strongylocentrotus-purpuratus_SPU023386-tr_SP-TBX2-3-Unchara :1.0 Strongylocentrotus-purpuratus_SPU013015-tr_SP-BRA-Uncharacte :1.0 Branchiostoma-belcheri-1_XP019614038.1_109461997-T-box-containing-protein-TBX6L-like :1.0 Branchiostoma-belcheri-1_XP019632778.1_109476306-brachyury-protein-like :1.0 Branchiostoma-belcheri-1_XP019623304.1_109469262-brachyury-protein-homolog-2-isoform :1.0 Branchiostoma-belcheri-1_XP019623300.1_109469259-brachyury-protein-homolog-1-isoform :1.0 Branchiostoma-floridae-rs_XP035691536.1_118426331-T-box-containing-protein-TBX6L-like :1.0 Branchiostoma-floridae-rs_XP035658836.1_118404018-T-box-transcription-factor-T-homolo :1.0 Branchiostoma-floridae-rs_XP035687366.1_118423359-T-box-transcription-factor-T-homolo :1.0 Branchiostoma-floridae-rs_XP035687472.1_118423429-T-box-transcription-factor-T-homolo :1.0 Oikopleura-dioica_GSOIDT00014261001_NONE :1.0 Oikopleura-dioica_GSOIDT00006159001_NONE :0.994 Oikopleura-dioica_GSOIDT00004289001_NONE :1.0 Oikopleura-dioica_GSOIDT00007455001_NONE :1.0 Oikopleura-dioica_GSOIDT00000279001_NONE :1.0 Ciona-savignyi_ENSCSAVT00000016577.1_NONE :1.0 Ciona-savignyi_ENSCSAVT00000020041.1_NONE :1.0 Ciona-savignyi_ENSCSAVT00000003855.1_NONE :1.0 Ciona-intestinalis_ENSCINT00000017704.3_NONE :1.0 Ciona-intestinalis_ENSCINT00000037322.1_tbx6a-T-box-transcri :1.0 Ciona-intestinalis_ENSCINT00000034896.1_NONE :0.994 Ciona-intestinalis_ENSCINT00000001477.3_brachyury-transcript :1.0 Botryllus-schlosseri_botctg005874g48703_NONE :1.0 Botryllus-schlosseri_botctg007226g53212_NONE :0.835 Botryllus-schlosseri_botctg002459g63408_NONE :0.784 Gallus-gallus-E102_ENSGALT00000042658.4_EOMES-eomesodermin :1.0 Gallus-gallus-E102_ENSGALT00000067150.2_TBR1-T-box-brain-1 :1.0 Gallus-gallus-E102_ENSGALT00000013434.6_TBX5-T-box-5 :1.0 Gallus-gallus-E102_ENSGALT00000024597.4_TBX19-T-box-19 :1.0 Gallus-gallus-E102_ENSGALT00000018726.5_TBXT-T-brachyury-tra :1.0 Homo-sapiens-E102_ENST00000177694.2_TBX21-T-box-transcripti :1.0 Homo-sapiens-E102_ENST00000449599.4_EOMES-eomesodermin :1.0 Homo-sapiens-E102_ENST00000389554.8_TBR1-T-box-brain-transc :1.0 Homo-sapiens-E102_ENST00000405440.7_TBX5-T-box-transcriptio :1.0 Homo-sapiens-E102_ENST00000367821.8_TBX19-T-box-transcripti :1.0 Homo-sapiens-E102_ENST00000366876.7_TBXT-T-box-transcriptio :1.0 >AnalysisTime 18.1 seconds ################ Settings ################ >Mode Search/rearrangement >AnalysisGroup Deuterostomia >Uploaded_your_sequences Homo-sapiens-E102_XXX1 ATGAGCTCCCCTGGCACCGAGAGCGCGGGAAAGAGCCTGCAGTACCGAGTGGACCACCTGCTGAGCGCCGTGGAGAATGAGCTGCAGGCGGGCAGCGAGAAGGGCGACCCCACAGAGCGCGAACTGCGCGTGGGCCTGGAGGAGAGCGAGCTGTGGCTGCGCTTCAAGGAGCTCACCAATGAGATGATCGTGACCAAGAACGGCAGGAGGATGTTTCCGGTGCTGAAGGTGAACGTGTCTGGCCTGGACCCCAACGCCATGTACTCCTTCCTGCTGGACTTCGTGGCGGCGGACAACCACCGCTGGAAGTACGTGAACGGGGAATGGGTGCCGGGGGGCAAGCCGGAGCCGCAGGCGCCCAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGGGCCCACTGGATGAAGGCTCCCGTCTCCTTCAGCAAAGTCAAGCTCACCAACAAGCTCAACGGAGGGGGCCAGATCATGCTGAACTCCTTGCATAAGTATGAGCCTCGAATCCACATAGTGAGAGTTGGGGGTCCACAGCGCATGATCACCAGCCACTGCTTCCCTGAGACCCAGTTCATAGCGGTGACTGCTTATCAGAACGAGGAGATCACAGCTCTTAAAATTAAGTACAATCCATTTGCAAAAGCTTTCCTTGATGCAAAGGAAAGAAGTGATCACAAAGAGATGATGGAGGAACCCGGAGACAGCCAGCAACCTGGGTACTCCCAATGGGGGTGGCTTCTTCCTGGAACCAGCACCCTGTGTCCACCTGCAAATCCTCATCCTCAGTTTGGAGGTGCCCTCTCCCTCCCCTCCACGCACAGCTGTGACAGGTACCCAACCCTGAGGAGCCACCGGTCCTCACCCTACCCCAGCCCCTATGCTCATCGGAACAATTCTCCAACCTATTCTGACAACTCACCTGCATGTTTATCCATGCTGCAATCCCATGACAATTGGTCCAGCCTTGGAATGCCTGCCCATCCCAGCATGCTCCCCGTGAGCCACAATGCCAGCCCACCTACCAGCTCCAGTCAGTACCCCAGCCTGTGGTCTGTGAGCAACGGCGCCGTCACCCCGGGCTCCCAGGCAGCAGCCGTGTCCAACGGGCTGGGGGCCCAGTTCTTCCGGGGCTCCCCCGCGCACTACACACCCCTCACCCATCCGGTCTCGGCGCCCTCTTCCTCGGGATCCCCACTGTACGAAGGGGCGGCCGCGGCCACAGACATCGTGGACAGCCAGTACGACGCCGCAGCCCAAGGCCGCCTCATAGCCTCATGGACACCTGTGTCGCCACCTTCCATG Branchiostoma-floridae-rs_XXX ATGAAGCAGACACCGGACCAGTTCTCGGTTAGCCACCTCCTGAGCGCCGTGGAGAGCGAGATCTCGGCGGGGTCGGAGAAGGGAGACCCGACCGAGCGGGACCTGAAGGTTACCCTGGGCGAGAAGCCGCTGTGGGAGAAGTTCAAGTCTCTCACCAACGAGATGATCGTCACCAAGAGTGGAAGACGCATGTTCCCCGTGCTGAAGGTGAACGTGTCCGGACTGGACCCTAACGCCATGTACTCCTTCCTGCTGGACTTCACGGCCGCCGACAACCACCGCTGGAAGTACGTGAACGGCGAGTGGGTTCCCGGCGGCAAGCCCGAGCCGTCCGTGCCGAGCTGCGTCTACATCCACCCCGACTCGCCCAACTTCGGCGCGCACTGGATGAAATCACCTGTGTCCTTCAGCAAGGTCAAACTCACCAACAAACTCAACGGTGGTGGACAGCAGATAATGCTGAACAGCCTGCACAAGTACGAACCGCGCATCCACATCGTGAAGGTGGGGGGACCTGACAACCAGAGAACCCTCAGTACCCACACATTCGCCGAGACACAGTTCATCGCTGTCACTGCCTACCAGAACGAAGAGCTGACAGCTTTGAAGATCAAGCACAACCCGTTCGCCAAAGCCTTCCTTGACGCTAAAGAACGAAATGACACCAAGAGTGGACATGACGACTTGACTGACCAGCAGCCTCAGTTTTCACAACTCGGAGGCTGGTTCCTGCCCGGTACAGGCCCCATCTGCCCGCCGCCCAACCCTCACCAGTTCGCCCCGTCCCTCGGCCTGCCCAGCCACGGCTGTGACAGATACAGCACTCTGAGGAACCACCGCTCGGCGCCCTACCCGCACCCGTACCAGAGAAGCTCACCTCCAACTAACTACGGACACGACACGGCGGCCAGCCTTCCCATGATGCCGACGCACGATAACTGGTCGGGCCTGCCGGTCTCCACCCACAACATGCTGTCCATGTCAGCCATGCCTCACACCACCACATCCACGCACGCGCAGTACCCCAACCTCTGGTCCGTCTCTAACAACAACCTGACGCCCACCACGCATGCGCAGACGCACATGTCCGGCACCATGGGCACGGGGCTGCCGCACCAGTTCCTGAGGACCACCGCGCCTGCGCCCTACCATTCCATCCCCACCTGCACGGTACCGACCACGGCGTCCAGCTCTCCGGTGTACCACGACTCGCACGAGGTGTCTTCCACGGACAGCGGGTACGGGCACTCCACTACCCCACCCGCCCCGCAGACAAGGATAACCTCAAACAACTGGAGCCCCATGACCATGCCGTCCATG Homo-sapiens-E102_ENST00000389554.7_T-box-brain-1 ATGCAGCTGGAGCACTGCCTTTCTCCTTCTATCATGCTCTCCAAGAAATTTCTCAATGTGAGCAGCAGCTACCCACATTCAGGCGGATCCGAGCTTGTCTTGCACGATCATCCCATTATCTCGACCACTGACAACCTGGAGAGAAGTTCACCTTTGAAAAAAATTACCAGGGGGATGACGAATCAGTCAGATACAGACAATTTTCCTGACTCCAAGGACTCACCAGGGGACGTCCAGAGAAGTAAACTCTCTCCTGTCTTGGACGGGGTCTCTGAGCTTCGTCACAGTTTCGATGGCTCTGCTGCAGATCGCTACCTCCTCTCTCAGTCCAGCCAGCCACAGTCTGCGGCCACTGCTCCCAGTGCCATGTTCCCGTACCCCGGCCAGCACGGACCGGCGCACCCCGCCTTCTCCATCGGCAGCCCTAGCCGCTACATGGCCCACCACCCGGTCATCACCAACGGAGCCTACAACAGCCTCCTGTCCAACTCCTCGCCGCAGGGATACCCCACGGCCGGCTACCCCTACCCACAGCAGTACGGCCACTCCTACCAAGGAGCTCCGTTCTACCAGTTCTCCTCCACCCAGCCGGGGCTGGTGCCCGGCAAAGCACAGGTGTACCTGTGCAACAGGCCCCTTTGGCTGAAATTTCACCGGCACCAAACGGAGATGATCATCACCAAACAGGGAAGGCGCATGTTTCCTTTTTTAAGTTTTAACATTTCTGGTCTCGATCCCACGGCTCATTACAATATTTTTGTGGATGTGATTTTGGCGGATCCCAATCACTGGAGGTTTCAAGGAGGCAAATGGGTTCCTTGCGGCAAAGCGGACACCAATGTGCAAGGAAATCGGGTCTATATGCATCCGGATTCCCCCAACACTGGGGCTCACTGGATGCGCCAAGAAATCTCTTTTGGAAAATTAAAACTTACGAACAACAAAGGAGCTTCAAATAACAATGGGCAGATGGTGGTTTTACAGTCCTTGCACAAGTACCAGCCCCGCCTGCATGTGGTGGAAGTGAACGAGGACGGCACGGAGGACACTAGCCAGCCCGGCCGCGTGCAGACGTTCACTTTCCCTGAGACTCAGTTCATCGCCGTCACCGCCTACCAGAACACGGATATTACACAACTGAAAATAGATCACAACCCTTTTGCAAAAGGATTTCGGGATAATTATGACACGATCTACACCGGCTGTGACATGGACCGCCTGACCCCCTCGCCCAACGACTCGCCGCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGGCCGGCTCTTTCCTGCAGGACCAGTTCGTGAGCAACTACGCCAAGGCCCGCTTCCACCCGGGCGCGGGCGCGGGCCCCGGGCCGGGTACGGACCGCAGCGTGCCGCACACCAACGGGCTGCTGTCGCCGCAGCAGGCCGAGGACCCGGGCGCGCCCTCGCCGCAACGCTGGTTTGTGACGCCGGCCAACAACCGGCTGGACTTCGCGGCCTCGGCCTATGACACGGCCACGGACTTCGCGGGCAACGCGGCCACGCTGCTCTCTTACGCGGCGGCGGGCGTGAAGGCGCTGCCGCTGCAGGCTGCAGGCTGCACTGGCCGCCCGCTCGGCTACTACGCCGACCCGTCGGGCTGGGGCGCCCGCAGTCCCCCGCAGTACTGCGGCACCAAGTCGGGCTCGGTGCTGCCCTGCTGGCCCAACAGCGCCGCGGCCGCCGCGCGCATGGCCGGCGCCAATCCCTACCTGGGCGAGGAGGCCGAGGGCCTGGCCGCCGAGCGCTCGCCGCTGCCGCCCGGCGCCGCCGAGGACGCCAAGCCCAAGGACCTGTCCGATTCCAGCTGGATCGAGACGCCCTCCTCGATCAAGTCCATCGACTCCAGCGACTCGGGGATTTACGAGCAGGCCAAGCGGAGGCGGATCTCGCCGGCCGACACGCCCGTGTCCGAGAGTTCGTCCCCGCTCAAGAGCGAGGTGCTGGCCCAGCGGGACTGCGAGAAGAACTGCGCCAAGGACATTAGCGGCTACTATGGCTTCTACTCGCACAGC >SpeciesTree [&r]((Prochlorococcus-marinus,(Corynebacterium-efficiens,Streptomyces-coelicolor)Actinobacteria)Bacteria,(Methanocaldococcus-jannaschii,((Symbiodinium-microadriaticum,(Emiliania-huxleyi,(Physcomitrella-patens,(Selaginella-moellendorffii,((Sorghum-bicolor,(Triticum-aestivum,Oryza-sativa)BOPclade)Liliopsida,(Beta-vulgaris,((Coffea-canephora,(Nicotiana-attenuata,(Capsicum-annuum,(Solanum-tuberosum,Solanum-lycopersicum)Solaneae)Solanoideae)Solanaceae)asterids,(Vitis-vinifera,((Cucumis-sativus,Populus-trichocarpa)fabids,(Theobroma-cacao,Arabidopsis-thaliana)malvids)fabidsMalvids)rosids)rosidsAsterids)eudicotyledons)Magnoliopsida)Tracheophyta)Embryophyta)HaptophytaViridiplantae)AlveolataHaptophyceae,((Sclerotinia-sclerotiorum,(Saccharomyces-cerevisiae,Saccharomyces-cerevisiae-1)Saccharomycescerevisiae)Fungi,((Sphaeroforma-arctica,Capsaspora-owczarzaki)Ichthyosporea,((Salpingoeca-rosetta,Monosiga-brevicollis)Salpingoecidae,(Mnemiopsis-leidyi,((Amphimedon-queenslandica,Ephydatia-muelleri)Porifera,(Trichoplax-adhaerens,(((Thelohanellus-kitauei,(Hydra-vulgaris,(Morbakka-virulenta,(Aurelia-aurita-P,Aurelia-aurita-A)aurita)CubozoaScyphozoa)HydrozoaScyphozoa)BivalvulidaHydrozoa,((Exaiptasia-pallida,(Nematostella-vectensis-1,Nematostella-vectensis)Nematostellavectensis)Actiniaria,((Amplexidiscus-fenestrafer,Discosoma-spp)Corallimorpharia,((Orbicella-faveolata,Stylophora-pistillata)Robust,(Astreopora-spp,((Montipora-efflorescens,Montipora-cactus)Montipora,((Acropora-tenuis,Acropora-yongei)tenuisYongei,((Acropora-intermedia,(Acropora-gemmifera,(Acropora-florida,Acropora-awi)floridaAwi)gemmiferaAwi)intermediaAwi,(((Acropora-digitifera,Acropora-digitifera-1)digitifera,(Acropora-acuminata,(Acropora-nasta,Acropora-microphthalma)nastaMicrophthalma)acuminataNasta)digitiferaAcuminata,((Acropora-echinata,Acropora-muricata)echinataMuricata,(Acropora-selago,(Acropora-hyacinthus,Acropora-cytherea)hyacinthusCytherea)selagoHyacinthus)echinataCytherea)digitiferaCytherea)intermediaCytherea)Acropora)MontiporaAcropora)Acroporidae)Scleractinia)CorallimorphariaScleractinia)Anthozoa)Cnidaria,(((Xenoturbella-bocki,Xenoturbella-profunda)Xenoturbellida,(Hofstenia-miamia,(Isodiametra-pulchra,(Symsagittifera-roscoffensis,Praesagittifera-naikaiensis)SymsagittiferaPraesagittifera)IsodiametraPraesagittifera)Acoela)Xenacoelomorpha,(((Adineta-vaga,(((Intoshia-linei,Dicyema-Japonicum)Mesozoa,(Echinococcus-granulosus,(Schmidtea-mediterranea,((Opisthorchis-viverrini,Clonorchis-sinensis)Opisthorchiidae,(Schistosoma-haematobium,Schistosoma-mansoni)Schistosoma)Trematoda)RhabditophoraTrematoda)Platyhelminthes)MesozoaPlatyhelminthes,((Capitella-teleta,Helobdella-robusta)Annelida,((Notospermus-geniculatus,(Phoronis-australis,Lingula-anatina)PhoronisLingula)NotospermusLingula,((Octopus-vulgaris,(Octopus-bimaculoides,Octopus-bimaculoides-1)OctopusBimaculoides)Cephalopoda,((Pomacea-canaliculata,(Lottia-gigantea,(Biomphalaria-glabrata,Aplysia-californica)Heterobranchia)CaenogastropodaHeterobranchia)Gastropoda,((Crassostrea-virginica,Crassostrea-gigas)Crassostrea,(Mizuhopecten-yessoensis,(Pinctada-fucata,Pinctada-fucata-1)pinctadaFucata)Pterioidea)Bivalvia)GastropodaBivalvia)Mollusca)NotospermusMollusca)Trochozoa)PlatyhelminthesTrochozoa)Spiralia,((Priapulus-caudatus,Halicryptus-spinulosus)Priapulida,((Trichinella-spiralis,(Strongyloides-ratti,((Onchocerca-volvulus,(Loa-loa,Brugia-malayi)LoaBrugia)CladeIII,(Pristionchus-pacificus,(Caenorhabditis-japonica,((Caenorhabditis-brenneri,(Caenorhabditis-remanei,Caenorhabditis-briggsae)RemaneiBriggsae)BrenneriBriggsae,(Caenorhabditis-elegans-1,Caenorhabditis-elegans)Caenorhabditiselegans)ElegansBriggsae)Caenorhabditis)CladeV)LoaCaenorhabditis)Spirurida)Nematoda,((Limulus-polyphemus,((Sarcoptes-scabiei,Tetranychus-urticae)Acariformes,(Ixodes-scapularis,(Centruroides-sculpturatus,(Parasteatoda-tepidariorum,Stegodyphus-mimosarum)Araneae)ScorpionesAranea)ParasitiformesAraneae)Arachnida)Chelicerata,(Strigamia-maritima,((((Hyalella-azteca,(Penaeus-vannamei,Penaeus-monodon)Penaeus)Eumalacostraca,(Eurytemora-affinis,Lepeophtheirus-salmonis)Copepoda)Multicrustacea,(Daphnia-magna,Daphnia-pulex)Daphnia)Crustacea,(Pediculus-humanus,((Zootermopsis-nevadensis,Cryptotermes-secundus)Dictyoptera,((Rhodnius-prolixus,Acyrthosiphon-pisum)Hemiptera,((Nasonia-vitripennis,((Atta-cephalotes,Solenopsis-invicta)Pteromalidae,(Apis-mellifera,(Bombus-impatiens,Bombus-terrestris)Bombus)Apidae)Aculeata)Hymenoptera,((Tribolium-castaneum,(Anoplophora-glabripennis,Dendroctonus-ponderosae)CerambycidaeCurculionidae)Coleoptera,((Bombyx-mori,(Heliconius-melpomene,(Danaus-plexippus,Melitaea-cinxia)DanausMelitaea)Nymphalidae)Lepidoptera,((Belgica-antarctica,(Anopheles-darlingi,(Culex-quinquefasciatus,Aedes-aegypti)CulexAedes)Culicidae)Culicomorpoha,(Mayetiola-destructor,(Megaselia-scalaris,(Teleopsis-dalmanni,(Lucilia-cuprina,((Drosophila-grimshawi,(Drosophila-mojavensis,Drosophila-virilis)mojavensisVirilis)grimshawiVirilis,(Drosophila-willistoni,((Drosophila-pseudoobscura,Drosophila-persimilis)obscuraG,(Drosophila-ananassae,((Drosophila-yakuba,Drosophila-erecta)yakubaErecta,((Drosophila-simulans,Drosophila-sechellia)simulansSechellia,(Drosophila-melanogaster,Drosophila-melanogaster-1)Drosophilamelanogaster)simulansMelanogaster)yakubaMelanogaster)melanogasterG)pseudoobscuraMelanogaster)Sophophora)Drosophilidae)CalliphoridaeDrosophilidae)Schizophora)Cyclorrhapha)Neodiptera)Diptera)LepidopteraDiptera)ColeopteraDiptera)HymenopteraDiptera)HemipteraDiptera)DictyopteraDiptera)Hexapoda)Pancrustacea)Mandibulata)Arthropoda)NematodaArthropoda)Ecdysozoa)Protostomia,((((Saccoglossus-kowalevskii-1,Saccoglossus-kowalevskii)Saccoglossuskowalevskii,Ptychodera-flava)Hemichordata,(Anneissia-japonica,((Asterias-rubens,(Patiria-miniata,(Acanthaster-planci-GBR,(Acanthaster-planci,Acanthaster-planci-1)Acanthasterplanci)Acanthaster)Valvatacea)Asteroidea,(Apostichopus-japonicus,(Lytechinus-variegatus,(Strongylocentrotus-purpuratus,Strongylocentrotus-purpuratus-1)Strongylocentrotuspurpuratus)Echinoidea)Echinozoa)Eleutherozoa)Echinodermata)Ambulacraria,(((Asymmetron-lucayanum,Asymmetron-lucayanum-CH)lucayanum,((Branchiostoma-belcheri,Branchiostoma-belcheri-1)Branchiostomabelcheri,((Branchiostoma-lanceolatum,Branchiostoma-lanceolatum-E)BranchiostomaLanceolatum,((Branchiostoma-floridae,Branchiostoma-floridae-rs)floridaeRS,Branchiostoma-floridae-1)Branchiostomafloridae)floridaeLanceolatum)AsymmetronBranchiostoma)Cephalochordata,(((Fritillaria-haplostoma,(Oikopleura-rufescens,(Oikopleura-longicauda,Oikopleura-dioica)longicaudaDioica)Oikopleuridae)Appendicularia,((((Dilioletta-gegenbauri,(Doliolum-denticulatum-L,(Doliolum-nationalis-I,Doliolum-nationalis)nationalis)denticulatumNationalis)Doliolida,(Thalia-orientalis,(Salpa-thompsoni,Salpa-fusiformis)Salpa)Salpida)Thaliacea,(Phallusia-mammillata,(((Ciona-savignyi,Ciona-savignyi-1)savignyi,((Ciona-intestinalis-1,Ciona-intestinalis)Cionaintestinalis,Ciona-intestinalisKH)intestinalis)Ciona,(Clavelina-lepadiformis,Cystodytes-dellechiajei)Aplousobranchia)CionaAplousobranchia)Enterogona)ThaliaceaEnterogona,((Bostrichobranchus-pilularis,(Molgula-occidentalis,(Molgula-tectiformis,(Molgula-manhattensis,(Molgula-occulta,Molgula-oculata)occultaOculata)manhattensisOculata)tectiformisOculata)occidentaliisOculata)Molgulidae,((Styela-plicata,Styela-clava)Styela,((Botrylloides-leachii,Botryllus-schlosseri)BotrylloidesBotryllus,(Dendrodoa-grossularia,(Polyandrocarpa-anguinea,Microcosmus-squamiger)Pyuridae)DendrodoaMicrocosmus)BotrylloidesMicrocosmus)Styelidae)Stolidobranchia)Ascidiacea)Urochordata,((Eptatretus-burgeri,Petromyzon-marinus)Cyclostomata,(((Callorhinchus-milii,Callorhinchus-milii-E102)milii,(Amblyraja-radiata-N,((Scyliorhinus-torazame,Scyliorhinus-canicula)Scyliorhinus,(Chiloscyllium-punctatum,(Rhincodon-typus,Rhincodon-typus-R)RhincodonTypus)Orectolobiformes)Selachii)Elasmobranchii)Chondrichthyes,((Erpetoichthys-calabaricus,(Acipenser-ruthenus,((Lepisosteus-oculatus,Lepisosteus-oculatus-1)Lepisosteusoculatus,((Scleropages-formosus,Paramormyrops-kingsleyae)Osteoglossomorpha,((Anguilla-anguilla,Megalops-cyprinoides)Elopomorpha,(((Denticeps-clupeoides,Clupea-harengus)Clupeiformes,(((Danio-rerio,Danio-rerio-1)Daniorerio,(Carassius-auratus,(Sinocyclocheilus-grahami,Cyprinus-carpio)SinocyclocheilusCyprinus)Cyprinini)Cypriniformes,(Electrophorus-electricus,((Tachysurus-fulvidraco,(Pangasianodon-hypophthalmus,Ictalurus-punctatus)Siluroidei)Siluriformes,(Astyanax-mexicanus,Pygocentrus-nattereri)Characiformes)SiluriformesCharaciformes)Characiphysae)Otophysi)Otomorpha,((Esox-lucius,(Coregonus-lavaretus,(Hucho-hucho,(Salmo-salar,(Salvelinus-alpinus,(Oncorhynchus-mykiss,(Oncorhynchus-tshawytscha,Oncorhynchus-kisutch)tshawytschaKisutch)Oncorhynchus)SalvelinusOncorhynchus)Salmonidae)Salmoninae)Salmoniformes)Protacanthopterygii,(Gadus-morhua,((Labrus-bergylta,((Sander-lucioperca,((Cyclopterus-lumpus,Gasterosteus-aculeatus)CyclopteridaeGasterosteidae,(Cottoperca-gobio,Notothenia-coriiceps)Notothenioidei)CyclopteridaeNotothenioidei)Perciformes,((Larimichthys-crocea,Sparus-aurata)SciaenidaeSparidae,(Mola-mola,(Tetraodon-nigroviridis,(Takifugu-rubripes-1,Takifugu-rubripes)Takifugurubripes)Tetraodontoidei)Tetraodontiformes)SciaenidaeTetraodontiformes)PerciformesTetraodontiformes)LabridaeTetraodontiformes,(((Cynoglossus-semilaevis,(Paralichthys-olivaceus,Scophthalmus-maximus)ParalichthyidaeScophthalmidae)Pleuronectiformes,(Lates-calcarifer,(Echeneis-naucrates,(Seriola-lalandi-dorsalis,Seriola-dumerili)Seriola)Carangiformes)CentropomidaeCarangiformes)PleuronectiformesCarangiformes,((((Stegastes-partitus,(Amphiprion-ocellaris,Acanthochromis-polyacanthus)AmphiprionAcanthochromis)Pomacentridae,(Gouania-willdenowi,Salarias-fasciatus)GobiesocidaeBlenniidae)PomacentridaeBlenniidae,(Amphilophus-citrinellus,(Oreochromis-niloticus,(Neolamprologus-brichardi,(Pundamilia-nyererei,(Maylandia-zebra,Haplochromis-burtoni)MaylandiaHaplochromis)Haplochromini)Atherinomorphae)AfricanCichlid)Cichlidae)PomacentridaeCichlidae,((Hippocampus-comes,(Sphaeramia-orbicularis,(Neogobius-melanostomus,(Periophthalmus-magnuspinnatus,Boleophthalmus-pectinirostris)Oxudercinae)Gobiidae)Gobiaria)SyngnathiformeGobiiformes,(((Monopterus-albus,Mastacembelus-armatus)Synbranchiformes,(Anabas-testudineus,Betta-splendens)Anabantiformes)Anabantaria,(((Nothobranchius-furzeri,(Austrofundulus-limnaeus,Kryptolebias-marmoratus)Rivulidae)Aplocheiloidei,(Cyprinodon-variegatus,(Fundulus-heteroclitus,(Xiphophorus-maculatus,(Poecilia-formosa,Poecilia-reticulata)Poecilia)Poeciliidae)FundulusPoecilia)Cyprinodontoidei)Cyprinodontiformes,(((Oryzias-melastigma,Oryzias-melastigma-E102)melastigma,Oryzias-javanicus)melastigmaJavanicus,(Oryzias-sinensis,(Oryzias-latipes-HSOK,(Oryzias-latipes-HNI,(Oryzias-latipes-E102,(Oryzias-latipes-1,Oryzias-latipes)latipesEnsNCBI)HdrR)hniHdrR)hsokHdrR)Oryziaslatipes)Oryzias)Atherinomorpha)SynbranchiformesAtherinomorpha)SyngnathiformesAtherinomorpha)PomacentridaeAtherinomorpha)PleuronectiformesAtherinomorpha)Percomorphaceae)Acanthomorphata)ProtacanthopterygiiAcanthomorphata)Clupeocephala)AnguillaClupeocephala)Teleostei)Neopterygii)Actinopteri)Actinopterygii,((Latimeria-chalumnae-1,Latimeria-chalumnae)Latimeriachalumnae,(((Rhinatrema-bivittatum,((Caecilia-tentaculata,Typhlonectes-compressicauda)CaeciliidaeTyphlonectidae,(Microcaecilia-dermatophaga,Microcaecilia-unicolor)Siphonopidae)CaeciliidaeSiphonopidae)Gymnophiona,(Tylototriton-wenxianensis,(Nanorana-parkeri,((Xenopus-tropicalis,Xenopus-tropicalis-1)Xenopustropicalis,(Xenopus-laevis,Xenopus-laevis-1)Xenopuslaevis)Xenopus)Anura)Batrachia)Amphibia,(((Sphenodon-punctatus,(Gekko-japonicus,((Salvator-merianae,Podarcis-muralis)Laterata,((Pogona-vitticeps,(Anolis-carolinensis-1,Anolis-carolinensis)Anoliscarolinensis1)Iguania,(Python-bivittatus,((Protobothrops-flavoviridis,Protobothrops-mucrosquamatus)Protobothrops,((Pantherophis-guttatus,(Thamnophis-sirtalis,Thamnophis-elegans)Thamnophis)Colubridae,(Naja-naja,(Laticauda-laticaudata,(Pseudonaja-textilis,Notechis-scutatus)Elapidae)LaticaudinaeAcanthophiinae)Elapidae)ProtobothropsElapidae)Colubroidea)Serpentes)Unidentata)Unidentata)Squamata)Lepidosauria,((Pelodiscus-sinensis,(Chelonia-mydas,(Chelonoidis-abingdonii,(Terrapene-mexicana,Chrysemys-picta)Emydidae)Testudinoidea)Durocryptodira)Testudines,(((Crocodylus-porosus,Gavialis-gangeticus)CrocodylusGavialis,(Alligator-mississippiensis,Alligator-sinensis)Alligator)Crocodylia,((Struthio-camelus,((Tinamus-guttatus,Nothoprocta-perdicaria)Tinamiformes,((Apteryx-rowi,Apteryx-australis)Apterygiformes,Dromaius-novaehollandiae)ApterygiformesCasuariiformes)TinamiformesCasuariiformes)Palaeognathae,(((Anser-cygnoides,(Anas-platyrhynchos,Anas-platyrhynchos-1)Anasplatyrhynchos)Anseriformes,((Meleagris-gallopavo-1,Meleagris-gallopavo)Meleagris,(Coturnix-japonica,(((Gallus-gallus,Gallus-gallus-E102)GallusE102,Gallus-gallus-E99)GallusE99,Gallus-gallus-1)Gallusgallus)Phasianidae)Galliformes)Galloanseres,((Columba-livia,Pterocles-gutturalis)ColumbidaePteroclidae,(((Tauraco-erythrolophus,Cuculus-canorus)MusophagiformesCuculiformes,(Antrostomus-carolinensis,(Calypte-anna,Chaetura-pelagica)Apodiformes)CaprimulgiformesApodiformes)MusophagiformesApodiformes,((Opisthocomus-hoazin,((Chlamydotis-macqueenii,(Mesitornis-unicolor,(Eurypyga-helias,Balearica-regulorum)EurypygidaeGruidae)MesitornithidaeGruidae)Gruiformes,(Calidris-pugnax,Charadrius-vociferus)Charadriiformes)GruiformesCharadriiformes)OpisthocomiformesCharadriiformes,((Gavia-stellata,((Pygoscelis-adeliae,Aptenodytes-forsteri)Sphenisciformes,(Fulmarus-glacialis,(Phaethon-lepturus,(Phalacrocorax-carbo,(Pelecanus-crispus,(Nipponia-nippon,Egretta-garzetta)ThreskiornithidaeArdeidae)Ciconiiformes)PhalacrocoracidaeCiconiiformes)Pelecaniformes)ProcellariiformesPelecaniformes)SphenisciformesPelecaniformes)Aequornithia,(((Athene-cunicularia,Tyto-alba)Strigiformes,(Colius-striatus,(Apaloderma-vittatum,(Buceros-rhinoceros,((Leptosomus-discolor,Merops-nubicus)Coraciiformes,Picoides-pubescens)CoraciiformesPiciformes)BucerotiformesPiciformes)TrogoniformesPiciformes)ColiiformesPiciformes)StrigiformesPiciformes,(Cariama-cristata,(((Falco-cherrug,Falco-peregrinus)Falconidae,(Aquila-chrysaetos,(Haliaeetus-leucocephalus,Haliaeetus-albicilla)Haliaeetus)Accipitridae)Falconiformes,((Nestor-notabilis,Melopsittacus-undulatus)Psittaciformes,(Acanthisitta-chloris,((Corvus-cornix,Corvus-brachyrhynchos)Corvidae,((Cyanistes-caeruleus,(Pseudopodoces-humilis,Parus-major)PseudopodocesParus)Sylvioidea,(((Ficedula-albicollis,Ficedula-albicollis-1)Ficedula,Sturnus-vulgaris)MuscicapidaeSturnidae,(Serinus-canaria,((Manacus-vitellinus,Lepidothrix-coronata)Pipridae,(Zonotrichia-albicollis,(Geospiza-fortis,((Taeniopygia-guttata,Taeniopygia-guttata-1)Taeniopygia,Lonchura-striata)Estrildidae)GeospizaEstrildidae)ZonotrichiaEstrildidae)PipridaeEstrildidae)Passeroidea)MuscipapoideaPasseroidea)SylvioideaPasseroidea)Passeriformes)AcanthisittidaePasseriformes)PsittaciformesPa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>taxonSampling_color Crassostrea-gigas_Black Pinctada-fucata_Black Caenorhabditis-elegans_Black Drosophila-melanogaster_Black Saccoglossus-kowalevskii_Green Ptychodera-flava_Green Acanthaster-planci_Purple Strongylocentrotus-purpuratus_Purple Branchiostoma-belcheri-1_Orange Branchiostoma-floridae-rs_Orange Oikopleura-dioica_Magenta Ciona-savignyi_Magenta Ciona-intestinalis_Magenta Botryllus-schlosseri_Magenta Gallus-gallus-E102_Blue Homo-sapiens-E102_Blue >E-value_threshold_for_reported_sequences 1e-3 >Number_of_hits_to_report_per_genome 3 >TreeSearchMethod Neighbor-joining method (Saitou and Nei 1986) >SubstitutionModel TN93 (Tamura and Nei 1993) + gamma >Aligned_site_rate_threshold_in_Unambiguously_aligned_sites 0.0 >Dataset Exclude3rd >Rearrangement_BS_value_threshold 60 >Dependencies ORTHOSCOPEv1.5.0 BLAST 2.7.1+ MAFFT v7.356b PAL2NAL v13 trimAl 1.2rev59 ape in R, Version: 5.0 Notung-2.9