phyloBARCODER (ver.1.0)

Phylogenetic tree: Alignment of blast hits: 168 sites (1) were used for tree reconstruction by excluding 12 sites (0). 1 Used4treeSearch 001111111111111111111111111111111111011111111111111111111111111111111111111111111111111111 AP009617.1_SRRNA_Engraulidae_Engraulinae_Amazonsprattus-scintilla_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTATAT-TTTTAAAGCAGAAAGCCTCTC MH613715.1_SRRNA_Engraulidae_Engraulinae_Engraulis-mordax_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAGTTTTCCCCTTTAAAGCAGAAAACCTCTC LC557053.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC DQ912050.1_SRRNA_Engraulidae_Engraulinae_Engraulis-eurystole_BlueHit ---------------------------------------CGGCGTAAAGAGTGGTTATGGAATTTTTTACCCTAAAGCAGAAAACCTCTC MT410920.1_SRRNA_Engraulidae_Engraulinae_Engraulis-encrasicolus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTTTACCCTAAAGCAGAAAACCTCTC AF417342.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC USERDB14368_gb_095_027_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC LC604998.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC ANON2_OTU_321_B06-0m_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC USERDB1672_gb_095_001_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC USERDB1697_gb_AB040676_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC LC519335.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC ANON4_OTU_032_B06-0m_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC USERDB1698_gb_AF417342_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC USERDB1716_gb_KF765500_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC KF765500.2_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC ANON12_OTU_157_B06-0m_BlueHit GCCAACGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC ANON11_OTU_040_B06-0m_BlueHit -CCACCGAGGTTATACGAGGGACCCTAGTTGATTTA-ATCGGCGTAAAGAGTGGTTATGGAGAATAAGAAACTAAAGCCGAAGACCTCTT ANON3_OTU_007_B06-0m_BlueHit GCCACCGCGGTTATACGAGGGACCCTAGTTGATTTA-ATCGGCGTAAAGAGTGGTTATGGAGAATAAGAAACTAAAGCCGAAGACCTCTT ANON10_OTU_391_B06-0m_90% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGAAAACT-TAGACTAAAGCCGAACACCTTCA MW232422.1_SRRNA_Scombrinae_Thunnini_Euthynnus-affinis_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGTAAACT-AAAACTAAAGCCGAATACCTTCA KP259548.1_SRRNA_Scombrinae_Thunnini_Auxis-rochei_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGAAAACT-AAAACTAAAGCCGAACACCTTCA USERDB11988_gb_KM651783_Euthynnus_affinis_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGTAAACT-AAAACTAAAGCCGAATACCTTCA MN122853.1_SRRNA_Scombrinae_Scombrini_Scomber-scombrus_95% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTTCA USERDB11945_gb_AF055594_Scomber_scombrus_94% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTCCA USERDB11943_gb_AB120717_Scomber_scombrus_95% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTTCA USERDB11931_gb_475_015_Scomber_australasicus_99% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA ANON9_OTU_031_B06-0m_99% --CACCGAGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA AB488406.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_99% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGAACCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA OK501307.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA LC669541.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA MT410945.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA AB488405.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA USERDB11924_gb_475_005_Scomber_japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA AB102724.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA ANON14_OTU_005_C00-300m_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA ANON8_OTU_023_B06-0m_99% --CACAGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA ANON1_OTU_006_B06-0m_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA 91 Used4treeSearch 111111111111111111111111111111111111111111111111111111100000111111111111111111111111110000 AP009617.1_SRRNA_Engraulidae_Engraulinae_Amazonsprattus-scintilla_BlueHit AAACTGTTATACGCATCCAGAGGTCTAAACCCCTCATTCGAAAGAAACTTTATTTTTGTCCACCAGAACCCACGAGAGCTGGGACACAAA MH613715.1_SRRNA_Engraulidae_Engraulinae_Engraulis-mordax_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAATCCCTCACACGAAAGTGACTTTATATTCGCCTACCAGAACCCACGAAAGCTGGGACACAAA LC557053.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACA---- DQ912050.1_SRRNA_Engraulidae_Engraulinae_Engraulis-eurystole_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATCTTCGCCTACCAGAACCCACGAAAGCTAGGATACAAA MT410920.1_SRRNA_Engraulidae_Engraulinae_Engraulis-encrasicolus_BlueHit AAACTGTTATACGCACCCAGAGGTTAAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAACCCACGAAAGCTAGGATACAAA AF417342.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA USERDB14368_gb_095_027_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACA---- LC604998.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA ANON2_OTU_321_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACACAAA USERDB1672_gb_095_001_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA---- USERDB1697_gb_AB040676_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA---- LC519335.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA---- ANON4_OTU_032_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA USERDB1698_gb_AF417342_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA---- USERDB1716_gb_KF765500_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA---- KF765500.2_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA ANON12_OTU_157_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA ANON11_OTU_040_B06-0m_BlueHit AGGCCGTCATACGTACCTAGAGGCTCGAATAACAAACACGAAAGTAGCTTTACCCCTTCCTGCCAGAACCCACGAGAGCTGGGATACAAA ANON3_OTU_007_B06-0m_BlueHit AGGCCGTCATACGTACCTAGAGGCTCGAATAACAAACACGAAAGTAGCTTTACCCCTTCCTGCCAGAACCCACGAGAGCTGGGATACAAA ANON10_OTU_391_B06-0m_90% AGGCAGTTATACGCATCCGAAGATACGAAGCCCCACCACGAAAGTGGCTTTATAA-----CCCCTGACCCCACGAAAGCTATGATACAAA MW232422.1_SRRNA_Scombrinae_Thunnini_Euthynnus-affinis_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA-----CCCCTGACCCCACGAAAGCTATGACACAAA KP259548.1_SRRNA_Scombrinae_Thunnini_Auxis-rochei_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA----CCCCCTGACCCCACGAAAGCTATGACACAAA USERDB11988_gb_KM651783_Euthynnus_affinis_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA-----CCCCTGACCCCACGAAAGCTATGACA---- MN122853.1_SRRNA_Scombrinae_Scombrini_Scomber-scombrus_95% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA USERDB11945_gb_AF055594_Scomber_scombrus_94% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACA---- USERDB11943_gb_AB120717_Scomber_scombrus_95% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACA---- USERDB11931_gb_475_015_Scomber_australasicus_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTG-----CCCCCGACCCCACGAAAGCTAGGACA---- ANON9_OTU_031_B06-0m_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA AB488406.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA OK501307.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA LC669541.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA MT410945.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA AB488405.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA USERDB11924_gb_475_005_Scomber_japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACA---- AB102724.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA ANON14_OTU_005_C00-300m_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACA---- ANON8_OTU_023_B06-0m_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA ANON1_OTU_006_B06-0m_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA Tree identification:
Num_UPLOAD UploadedName Species Genus Middle_grouping Large_grouping
ANON2 OTU_321_B06-0m_BlueHit Engraulis-japonicus Engraulis Engraulinae Engraulidae
ANON4 OTU_032_B06-0m_BlueHit Engraulis-japonicus Engraulis Engraulinae Engraulidae
ANON12 OTU_157_B06-0m_BlueHit Engraulis-japonicus Engraulis Engraulinae Engraulidae
ANON11 OTU_040_B06-0m_BlueHit Auxis-rochei/
Euthynnus-affinis/
Scomber-colias/
Scomber-japonicus/
Scomber-scombrus
Auxis/
Euthynnus/
Scomber
Scombrini/
Thunnini
Scombrinae
ANON3 OTU_007_B06-0m_BlueHit Auxis-rochei/
Euthynnus-affinis/
Scomber-colias/
Scomber-japonicus/
Scomber-scombrus
Auxis/
Euthynnus/
Scomber
Scombrini/
Thunnini
Scombrinae
ANON10 OTU_391_B06-0m_90% Auxis-rochei/
Euthynnus-affinis/
Scomber-colias/
Scomber-japonicus/
Scomber-scombrus
Auxis/
Euthynnus/
Scomber
Scombrini/
Thunnini
Scombrinae
ANON9 OTU_031_B06-0m_99% Scomber-colias/
Scomber-japonicus
Scomber Scombrini Scombrinae
ANON14 OTU_005_C00-300m_100% Scomber-japonicus Scomber Scombrini Scombrinae
ANON8 OTU_023_B06-0m_99% Scomber-japonicus Scomber Scombrini Scombrinae
ANON1 OTU_006_B06-0m_100% Scomber-japonicus Scomber Scombrini Scombrinae
################ Settings ################ > Number of queries First2seqs # Database anonymous >Number of hits for each query 5 >E-value threshold for reported sequences 1e-3 # Database installed >Number of hits (SpeciesDB) 5 >Number of hits (HaplotypeDB) 5 >E-value 1e-3 # Database user's reference >Number of hits 5 >E-value 1e-3 >Database installed MIDORI ver.GB254 (Leray et al. 2022) >TreeSearchMethod Neighbor-joining method (Saitou and Nei 1986) >SubstitutionModel TN93 (Tamura and Nei 1993) + gamma >Dependencies BLAST 2.7.1+ MAFFT v7.356b trimAl 1.2rev59 ape in R, Version: 5.0 Analysis time: 5.7 seconds