phyloBARCODER (ver.1.0)
Phylogenetic tree:
Alignment of blast hits:
168 sites (1) were used for tree reconstruction by excluding 12 sites (0).
1
Used4treeSearch 001111111111111111111111111111111111011111111111111111111111111111111111111111111111111111
AP009617.1_SRRNA_Engraulidae_Engraulinae_Amazonsprattus-scintilla_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTATAT-TTTTAAAGCAGAAAGCCTCTC
MH613715.1_SRRNA_Engraulidae_Engraulinae_Engraulis-mordax_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAGTTTTCCCCTTTAAAGCAGAAAACCTCTC
LC557053.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
DQ912050.1_SRRNA_Engraulidae_Engraulinae_Engraulis-eurystole_BlueHit ---------------------------------------CGGCGTAAAGAGTGGTTATGGAATTTTTTACCCTAAAGCAGAAAACCTCTC
MT410920.1_SRRNA_Engraulidae_Engraulinae_Engraulis-encrasicolus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTTTACCCTAAAGCAGAAAACCTCTC
AF417342.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
USERDB14368_gb_095_027_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
LC604998.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
ANON2_OTU_321_B06-0m_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
USERDB1672_gb_095_001_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
USERDB1697_gb_AB040676_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
LC519335.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
ANON4_OTU_032_B06-0m_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
USERDB1698_gb_AF417342_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
USERDB1716_gb_KF765500_Engraulis_japonicus_BlueHit --CACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
KF765500.2_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit GCCACCGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
ANON12_OTU_157_B06-0m_BlueHit GCCAACGCGGTTATACGAGAGACCCTAGTTGATTGA-AGCGGCGTAAAGAGTGGTTATGGAATTTTCTACCCTAAAGCAGAAAACCTCTC
ANON11_OTU_040_B06-0m_BlueHit -CCACCGAGGTTATACGAGGGACCCTAGTTGATTTA-ATCGGCGTAAAGAGTGGTTATGGAGAATAAGAAACTAAAGCCGAAGACCTCTT
ANON3_OTU_007_B06-0m_BlueHit GCCACCGCGGTTATACGAGGGACCCTAGTTGATTTA-ATCGGCGTAAAGAGTGGTTATGGAGAATAAGAAACTAAAGCCGAAGACCTCTT
ANON10_OTU_391_B06-0m_90% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGAAAACT-TAGACTAAAGCCGAACACCTTCA
MW232422.1_SRRNA_Scombrinae_Thunnini_Euthynnus-affinis_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGTAAACT-AAAACTAAAGCCGAATACCTTCA
KP259548.1_SRRNA_Scombrinae_Thunnini_Auxis-rochei_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGAAAACT-AAAACTAAAGCCGAACACCTTCA
USERDB11988_gb_KM651783_Euthynnus_affinis_92% --CACCGCGGTTATACGAGAGGCCCAAGTTGACAGACACCGGCGTAAAGCGTGGTTAAGGTAAACT-AAAACTAAAGCCGAATACCTTCA
MN122853.1_SRRNA_Scombrinae_Scombrini_Scomber-scombrus_95% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTTCA
USERDB11945_gb_AF055594_Scomber_scombrus_94% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTCCA
USERDB11943_gb_AB120717_Scomber_scombrus_95% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAATTTAAAACTAAAGCCGAACACCTTCA
USERDB11931_gb_475_015_Scomber_australasicus_99% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
ANON9_OTU_031_B06-0m_99% --CACCGAGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
AB488406.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_99% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGAACCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
OK501307.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
LC669541.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
MT410945.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
AB488405.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
USERDB11924_gb_475_005_Scomber_japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
AB102724.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
ANON14_OTU_005_C00-300m_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
ANON8_OTU_023_B06-0m_99% --CACAGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
ANON1_OTU_006_B06-0m_100% --CACCGCGGTTATACGATAGGCCCAAGTTGACAGACCCCGGCGTAAAGCGTGGTTAGGGAAAACTCAAAACTAAAGCCGAATATCTTCA
91
Used4treeSearch 111111111111111111111111111111111111111111111111111111100000111111111111111111111111110000
AP009617.1_SRRNA_Engraulidae_Engraulinae_Amazonsprattus-scintilla_BlueHit AAACTGTTATACGCATCCAGAGGTCTAAACCCCTCATTCGAAAGAAACTTTATTTTTGTCCACCAGAACCCACGAGAGCTGGGACACAAA
MH613715.1_SRRNA_Engraulidae_Engraulinae_Engraulis-mordax_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAATCCCTCACACGAAAGTGACTTTATATTCGCCTACCAGAACCCACGAAAGCTGGGACACAAA
LC557053.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACA----
DQ912050.1_SRRNA_Engraulidae_Engraulinae_Engraulis-eurystole_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATCTTCGCCTACCAGAACCCACGAAAGCTAGGATACAAA
MT410920.1_SRRNA_Engraulidae_Engraulinae_Engraulis-encrasicolus_BlueHit AAACTGTTATACGCACCCAGAGGTTAAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAACCCACGAAAGCTAGGATACAAA
AF417342.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA
USERDB14368_gb_095_027_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACA----
LC604998.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA
ANON2_OTU_321_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTAGGACACAAA
USERDB1672_gb_095_001_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA----
USERDB1697_gb_AB040676_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA----
LC519335.1_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA----
ANON4_OTU_032_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA
USERDB1698_gb_AF417342_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA----
USERDB1716_gb_KF765500_Engraulis_japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACA----
KF765500.2_SRRNA_Engraulidae_Engraulinae_Engraulis-japonicus_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA
ANON12_OTU_157_B06-0m_BlueHit AAACTGTTATACGCACCCAGAGGTTGAAACCCCTTACACGAAAGTGACTTTATTTTCGCCTACCAGAAGCCACGAAAGCTGGGACACAAA
ANON11_OTU_040_B06-0m_BlueHit AGGCCGTCATACGTACCTAGAGGCTCGAATAACAAACACGAAAGTAGCTTTACCCCTTCCTGCCAGAACCCACGAGAGCTGGGATACAAA
ANON3_OTU_007_B06-0m_BlueHit AGGCCGTCATACGTACCTAGAGGCTCGAATAACAAACACGAAAGTAGCTTTACCCCTTCCTGCCAGAACCCACGAGAGCTGGGATACAAA
ANON10_OTU_391_B06-0m_90% AGGCAGTTATACGCATCCGAAGATACGAAGCCCCACCACGAAAGTGGCTTTATAA-----CCCCTGACCCCACGAAAGCTATGATACAAA
MW232422.1_SRRNA_Scombrinae_Thunnini_Euthynnus-affinis_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA-----CCCCTGACCCCACGAAAGCTATGACACAAA
KP259548.1_SRRNA_Scombrinae_Thunnini_Auxis-rochei_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA----CCCCCTGACCCCACGAAAGCTATGACACAAA
USERDB11988_gb_KM651783_Euthynnus_affinis_92% GGGCAGTTATACGCATCCGAAGGCACGAAGCCCCACCACGAAAGTGGCTTTATGA-----CCCCTGACCCCACGAAAGCTATGACA----
MN122853.1_SRRNA_Scombrinae_Scombrini_Scomber-scombrus_95% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
USERDB11945_gb_AF055594_Scomber_scombrus_94% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACA----
USERDB11943_gb_AB120717_Scomber_scombrus_95% GGGCAGTCATACGCTTCCGAAGGCACGAAGCCCCTCCACGAAAGTGGCTTTACTA-----CCCCCGACCCCACGAAAGCTAGGACA----
USERDB11931_gb_475_015_Scomber_australasicus_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTG-----CCCCCGACCCCACGAAAGCTAGGACA----
ANON9_OTU_031_B06-0m_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
AB488406.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
OK501307.1_SRRNA_Scombrinae_Scombrini_Scomber-colias_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
LC669541.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
MT410945.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
AB488405.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
USERDB11924_gb_475_005_Scomber_japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACA----
AB102724.1_SRRNA_Scombrinae_Scombrini_Scomber-japonicus_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
ANON14_OTU_005_C00-300m_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACA----
ANON8_OTU_023_B06-0m_99% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
ANON1_OTU_006_B06-0m_100% GGGCAGTTATACGCTTCCGAAGACACGAAGCCCTTCCACGAAAGTGACTTTATTA-----CCCCCGACCCCACGAAAGCTAGGACACAAA
Tree identification:
Num_UPLOAD |
UploadedName |
Species |
Genus |
Middle_grouping |
Large_grouping |
ANON2 |
OTU_321_B06-0m_BlueHit |
Engraulis-japonicus |
Engraulis |
Engraulinae |
Engraulidae |
ANON4 |
OTU_032_B06-0m_BlueHit |
Engraulis-japonicus |
Engraulis |
Engraulinae |
Engraulidae |
ANON12 |
OTU_157_B06-0m_BlueHit |
Engraulis-japonicus |
Engraulis |
Engraulinae |
Engraulidae |
ANON11 |
OTU_040_B06-0m_BlueHit |
Auxis-rochei/ Euthynnus-affinis/ Scomber-colias/ Scomber-japonicus/ Scomber-scombrus |
Auxis/ Euthynnus/ Scomber |
Scombrini/ Thunnini |
Scombrinae |
ANON3 |
OTU_007_B06-0m_BlueHit |
Auxis-rochei/ Euthynnus-affinis/ Scomber-colias/ Scomber-japonicus/ Scomber-scombrus |
Auxis/ Euthynnus/ Scomber |
Scombrini/ Thunnini |
Scombrinae |
ANON10 |
OTU_391_B06-0m_90% |
Auxis-rochei/ Euthynnus-affinis/ Scomber-colias/ Scomber-japonicus/ Scomber-scombrus |
Auxis/ Euthynnus/ Scomber |
Scombrini/ Thunnini |
Scombrinae |
ANON9 |
OTU_031_B06-0m_99% |
Scomber-colias/ Scomber-japonicus |
Scomber |
Scombrini |
Scombrinae |
ANON14 |
OTU_005_C00-300m_100% |
Scomber-japonicus |
Scomber |
Scombrini |
Scombrinae |
ANON8 |
OTU_023_B06-0m_99% |
Scomber-japonicus |
Scomber |
Scombrini |
Scombrinae |
ANON1 |
OTU_006_B06-0m_100% |
Scomber-japonicus |
Scomber |
Scombrini |
Scombrinae |
################ Settings ################
> Number of queries
First2seqs
# Database anonymous
>Number of hits for each query
5
>E-value threshold for reported sequences
1e-3
# Database installed
>Number of hits (SpeciesDB)
5
>Number of hits (HaplotypeDB)
5
>E-value
1e-3
# Database user's reference
>Number of hits
5
>E-value
1e-3
>Database installed
MIDORI ver.GB254 (Leray et al. 2022)
>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)
>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma
>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0
Analysis time: 5.7 seconds