Phylogenetic tree:
Alignment of blast hits:
368 sites (1) were used for tree reconstruction by excluding 0 sites (0).
1
Used4treeSearch 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
DQ643834.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597011.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597005.1_SRRNA_Mussidae_Faviinae_Favia-fragum_99% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
EF596998.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_99% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
AF333060.1_SRRNA_Faviina_Merulinidae_Favites-abdita_99% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
UPLOAD1_A-1D_329_NONE AATTTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGATTATCGAATTAAGCAACACGCTCCTCTAAAT
DQ643833.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGACTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597002.1_SRRNA_Mussidae_Faviinae_Diploria-labyrinthiformis_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGACTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597012.1_SRRNA_Mussidae_Faviinae_Manicina-areolata_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGACTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597003.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-strigosa_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGACTATCGAATTAAGCAACACGCTCCTCTAAAT
EF597001.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-clivosa_98% AAATTGACGACGGCCATGCAACACCTGAAAAAGCTAGTTTTGGTAAGGTAACTCGCGGACTATCGAATTAAGCAACACGCTCCTCTAAAT
91
Used4treeSearch 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
DQ643834.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597011.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597005.1_SRRNA_Mussidae_Faviinae_Favia-fragum_99% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF596998.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_99% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
AF333060.1_SRRNA_Faviina_Merulinidae_Favites-abdita_99% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
UPLOAD1_A-1D_329_NONE AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
DQ643833.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597002.1_SRRNA_Mussidae_Faviinae_Diploria-labyrinthiformis_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597012.1_SRRNA_Mussidae_Faviinae_Manicina-areolata_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597003.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-strigosa_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
EF597001.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-clivosa_98% AACAATGAACAGCCAAGTTTTTTGAATTTTAATCTTGCGACCGTACTACTCAAGCGACTTTCTTTTACTGTATCGACTACCAGGGTCTCT
181
Used4treeSearch 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
DQ643834.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AATCCTGTTTGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCCC
EF597011.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% AATCCTGTTTGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCCC
EF597005.1_SRRNA_Mussidae_Faviinae_Favia-fragum_99% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
EF596998.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_99% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
AF333060.1_SRRNA_Faviina_Merulinidae_Favites-abdita_99% AATCCTGTTCGTTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTCTTTCTTTTAATATTGCAC
UPLOAD1_A-1D_329_NONE AATCCTGTTCGTTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
DQ643833.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_98% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
EF597002.1_SRRNA_Mussidae_Faviinae_Diploria-labyrinthiformis_98% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
EF597012.1_SRRNA_Mussidae_Faviinae_Manicina-areolata_98% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
EF597003.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-strigosa_98% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
EF597001.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-clivosa_98% AATCCTGTTCGCTCCCAGAACCTTCGTGTTAAAGAAAAAAAATAAATTGTCTTCACATAAAAAATTCTTTTTTTTCTTTTAATATTGCAC
271
Used4treeSearch 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
DQ643834.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597011.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597005.1_SRRNA_Mussidae_Faviinae_Favia-fragum_99% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF596998.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_99% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
AF333060.1_SRRNA_Faviina_Merulinidae_Favites-abdita_99% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
UPLOAD1_A-1D_329_NONE CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCCTCACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTCTCACCGCG
DQ643833.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597002.1_SRRNA_Mussidae_Faviinae_Diploria-labyrinthiformis_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597012.1_SRRNA_Mussidae_Faviinae_Manicina-areolata_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597003.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-strigosa_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
EF597001.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-clivosa_98% CATTACTAAAAAAATTCTATTTATTTTAAATGTTTTACCTTTACACGCTTTCTGCTTTTTCTAAAAAACAAACCCTTAAGTTTCACCGCG
361
Used4treeSearch 11111111
DQ643834.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% TCTGCTGG
EF597011.1_SRRNA_Mussidae_Mussinae_Mussa-angulosa_98% TCTGCTGG
EF597005.1_SRRNA_Mussidae_Faviinae_Favia-fragum_99% TCTGCTGG
EF596998.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_99% TCTGCTGG
AF333060.1_SRRNA_Faviina_Merulinidae_Favites-abdita_99% TCTGCTGG
UPLOAD1_A-1D_329_NONE TCTGCTGG
DQ643833.1_SRRNA_Mussidae_Faviinae_Colpophyllia-natans_98% TCTGCTGG
EF597002.1_SRRNA_Mussidae_Faviinae_Diploria-labyrinthiformis_98% TCTGCTGG
EF597012.1_SRRNA_Mussidae_Faviinae_Manicina-areolata_98% TCTGCTGG
EF597003.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-strigosa_98% TCTGCTGG
EF597001.1_SRRNA_Mussidae_Faviinae_Pseudodiploria-clivosa_98% TCTGCTGG
################ Settings ################
>blastn E-value threshold for reportedsequences
1e-3
>Number of hits for each query (Uploaded your database)
NotSelected
>Number of hits for each query (Species database)
5
>Number of hits for each query (Haplotype database)
10
>Number of hits for each query (your reference database)
10
>Database
MIDORI ver.GB254 (Leray et al. 2022)
>TreeSearchMethod
Neighbor-joining method (Saitou and Nei 1986)
>SubstitutionModel
TN93 (Tamura and Nei 1993) + gamma
>Dependencies
BLAST 2.7.1+
MAFFT v7.356b
trimAl 1.2rev59
ape in R, Version: 5.0
Analysis time: 3.7 seconds